dynast.constants

Module Contents

dynast.constants.STATS_PREFIX = run_info

dynast.constants.STAR_SOLO_DIR = Solo.out

dynast.constants.STAR_GENE_DIR = Gene

dynast.constants.STAR_RAW_DIR = raw

dynast.constants.STAR_FILTERED_DIR = filtered

dynast.constants.STAR_VELOCYTO_DIR = Velocyto

dynast.constants.STAR_BAM_FILENAME = Aligned.sortedByCoord.out.bam

dynast.constants.STAR_BAI_FILENAME = Aligned.sortedByCoord.out.bai

dynast.constants.STAR_BARCODES_FILENAME = barcodes.tsv

dynast.constants.STAR_FEATURES_FILENAME = features.tsv

dynast.constants.STAR_MATRIX_FILENAME = matrix.mtx

dynast.constants.CONSENSUS_BAM_FILENAME = consensus.bam

dynast.constants.COUNT_DIR = count

dynast.constants.PARSE_DIR = 0_parse

dynast.constants.CONVS_FILENAME = convs.pkl.gz

dynast.constants.GENES_FILENAME = genes.pkl.gz

dynast.constants.CONVERSIONS_FILENAME = conversions.csv

dynast.constants.CONVERSIONS_INDEX_FILENAME = conversions.idx

dynast.constants.ALIGNMENTS_FILENAME = alignments.csv

dynast.constants.COVERAGE_FILENAME = coverage.csv

dynast.constants.COVERAGE_INDEX_FILENAME = coverage.idx

dynast.constants.SNPS_FILENAME = snps.csv

dynast.constants.COUNTS_PREFIX = counts

dynast.constants.ESTIMATE_DIR = estimate

dynast.constants.RATES_FILENAME = rates.csv

dynast.constants.P_E_FILENAME = p_e.csv

dynast.constants.P_C_PREFIX = p_c

dynast.constants.AGGREGATE_FILENAME = aggregate.csv

dynast.constants.ADATA_FILENAME = adata.h5ad