dynast.config

Module Contents

dynast.config.PACKAGE_PATH

dynast.config.PLATFORM

dynast.config.BINS_DIR

dynast.config.MODELS_DIR

dynast.config.MODEL_PATH

dynast.config.MODEL_NAME = pi

dynast.config.RECOMMENDED_MEMORY

dynast.config.STAR_ARGUMENTS

dynast.config.STAR_SOLO_ARGUMENTS

dynast.config.NASC_ARGUMENTS

dynast.config.BAM_PEEK_READS = 500000

dynast.config.BAM_REQUIRED_TAGS = ['MD']

dynast.config.BAM_READGROUP_TAG = RG

dynast.config.BAM_BARCODE_TAG = CB

dynast.config.BAM_UMI_TAG = UB

dynast.config.BAM_GENE_TAG = GX

dynast.config.BAM_CONSENSUS_READ_COUNT_TAG = RN

dynast.config.COUNTS_SPLIT_THRESHOLD = 50000

dynast.config.VELOCITY_BLACKLIST = ['unassigned', 'ambiguous']