dynast.count

Module Contents

Functions

count(bam_path, gtf_path, out_dir, strand='forward', umi_tag=None, barcode_tag=None, gene_tag='GX', barcodes=None, control=False, quality=27, conversions=frozenset([('TC', )]), snp_threshold=0.5, snp_min_coverage=1, snp_csv=None, n_threads=8, temp_dir=None, velocity=True, strict_exon_overlap=False, dedup_mode='auto', nasc=False, overwrite=False)

dynast.count.count(bam_path, gtf_path, out_dir, strand='forward', umi_tag=None, barcode_tag=None, gene_tag='GX', barcodes=None, control=False, quality=27, conversions=frozenset([('TC',)]), snp_threshold=0.5, snp_min_coverage=1, snp_csv=None, n_threads=8, temp_dir=None, velocity=True, strict_exon_overlap=False, dedup_mode='auto', nasc=False, overwrite=False)