Dynast: Complete splicing and labeling quantification from metabolic labeling scRNA-seq

Warning

Dynast is currently in beta-testing and is still under active development. Usage may change without warning.

Introduction:

• Getting started
  • Installation
  • Command-line structure
  • Basic usage

Contents:

• Pipeline Usage
  • Building the STAR index with ref
  • Aligning FASTQs with align
  • Calling consensus sequences with consensus
  • Quantifying counts with count
  • Estimating counts with estimate
  • Control samples
• Technical Information
  • Consensus procedure
  • Count procedure
  • Estimate procedure
  • Read groups
  • Statistical estimation
• API
  • Subpackages
  • Submodules
  • Package Contents
• References

Tutorials:

• NASC-seq
• scSLAM-seq
• scNT-seq
• sci-fate

Indices and tables

• Index

• Module Index

• Search Page